A full list of publications can be found on Google Scholar.
Review Articles, Essays, and Perspectives
Kennedy, A. (2022). Boiling over. Science, 378:484-485. (pdf)
Kennedy, A. (2022). The what, how, and why of naturalistic behavior. Current Opinion in Neurobiology, 74:102549. (pdf)
Kennedy, A., Asahina, K., Hoopfer, E., Inagaki, H., Jung, Y., Lee, H., Remedios, R., & Anderson, D. J. (2014). Internal states and behavioral decision-making: toward an integration of emotion and cognition. In Cold Spring Harbor symposia on quantitative biology (Vol. 79, pp. 199-210). CSHL Press. (pdf)
Select peer-reviewed papers
Gast, R., Solla, S., & Kennedy, A. (2023) Macroscopic dynamics of neural networks with heterogeneous spiking thresholds. Physical Review E, 107:024306. (pdf)
Nair, A., Karigo, T., Yang, B., Ganguli, S., Schnitzer, M.J., Linderman, S.W., Anderson, D.J., & Kennedy, A. (2023). An approximate line attractor in the hypothalamus encodes an aggressive state. Cell, 186:178-193. (pdf)
Weissbourd, B., Momose, T., Nair, A., Kennedy, A., Hunt, B., & Anderson, D. J. (2021). A genetically tractable jellyfish model for systems and evolutionary neuroscience. Cell, 184(24), 5854-5868. (pdf)
Segalin, C., Williams, J., Karigo, T., Hui, M., Zelikowsky, M., Sun, J. J., Anderson, D.J., Perona, P., and Kennedy, A. (2021). The Mouse Action Recognition System (MARS) software pipeline for automated analysis of social behaviors in mice. eLife, 10, e63720. (pdf | GitHub for MARS | GitHub for BENTO | GitHub for MARS Developer)
Sun, J. J., Karigo, T., Chakraborty, D., Mohanty, S. P., Wild, B., Sun, Q., Chen, C., Anderson, D.J., Perona, P., Yue, Y., & Kennedy, A. (2021). The multi-agent behavior dataset: Mouse dyadic social interactions. NeurIPS Datasets and Benchmarks. (pdf | Dataset)
Sun, J. J., Kennedy, A., Zhan, E., Anderson, D. J., Yue, Y., & Perona, P. (2021). Task programming: Learning data efficient behavior representations. CVPR (pp. 2876-2885). (pdf | suppl | GitHub for TREBA)
Karigo, T., Kennedy, A., Yang, B., Liu, M., Tai, D., Wahle, I. A., & Anderson, D. J. (2021). Distinct hypothalamic control of same-and opposite-sex mounting behaviour in mice. Nature, 589(7841), 258-263. (pdf)
Kennedy, A.*, Kunwar, P. S.*, Li, L. Y.*, Stagkourakis, S., Wagenaar, D. A., & Anderson, D. J. (2020). Stimulus-specific hypothalamic encoding of a persistent defensive state. Nature, 586(7831), 730-734.(pdf)
Jung, Y., Kennedy, A., Chiu, H., Mohammad, F., Claridge-Chang, A., & Anderson, D. J. (2020). Neurons that function within an integrator to promote a persistent behavioral state in Drosophila. Neuron, 105(2), 322-333. (pdf)
Remedios, R.*, Kennedy, A.*, Zelikowsky, M., Grewe, B. F., Schnitzer, M. J., & Anderson, D. J. (2017). Social behaviour shapes hypothalamic neural ensemble representations of conspecific sex. Nature, 550 (7676), 388. (pdf)
Hong, W., Kennedy, A., Burgos-Artizzu, X. P., Zelikowsky, M., Navonne, S. G., Perona, P., & Anderson, D. J. (2015). Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning. PNAS, 112(38), E5351-E5360. (pdf)
Kennedy, A., Wayne, G., Kaifosh, P., Alviña, K., Abbott, L. F., & Sawtell, N. B. (2014). A temporal basis for predicting the sensory consequences of motor commands in an electric fish. Nature Neuroscience, 17(3), 416. (pdf)