Software

RibORF: Identify genome-wide translated open reading frames using ribosome profiling. (GitHub)

Rfoot: Transcriptomic RNase-footprinting using ribosome profiling. (GitHub)

PepScore: Calculate peptide stable probability based on encoding open reading frame (ORF) features. (GitHub)

PolyaModelsHuman: Deep learning models to predict human polyA sites and calculate site strength. (GitHub)

PolyaModelsYeast: Deep learning models to predict yeast polyA sites and calculate site strength. (GitHub)

Protocol

Rfoot-seq: Transcriptomic RNase footprinting for mapping stable RNA-protein complexes and rapid ribosome profiling. (Current Protocols)