| Clark DA#, Fitzgerald JE# | 2024 | Optimization in visual motion estimation. | Annu Rev Vis Sci | https://doi.org/10.1146/annurev-vision-101623-025432 |
| Dominé CCJ*, Braun L*, Fitzgerald JE, Saxe AM | 2023 | Exact learning dynamics of deep linear networks with prior knowledge. | J Stat Mech | https://iopscience.iop.org/article/10.1088/1742-5468/ad01b8/meta |
| Rajagopalan AE, Darshan R, Hibbard KL, Fitzgerald JE, Turner GC | 2023 | Reward expectations direct learning and drive operant matching in Drosophila. | Proc Natl Acad Sci USA | https://doi.org/10.1073/pnas.2221415120 |
| Biswas T, Li TL, Fitzgerald JE | 2023 | Tensor formalism for predicting synaptic connections with ensemble modeling or optimization. | arXiv | https://doi.org/10.48550/arXiv.2310.20309 |
| Sun W*, Winnubst J*, Natrajan M, Lai C, Kajikawa K, Michaelos M, Gattoni R, Stringer C, Flickinger D, Fitzgerald JE, Spruston N | 2023 | Learning produces a hippocampal cognitive map in the form of an orthogonalized state machine. | bioRxiv | https://doi.org/10.1101/2023.08.03.551900 |
| Sun W, Advani M, Spruston N, Saxe A#, Fitzgerald JE# | 2023 | Organizing memories for generalization in complementary learning systems. | Nat Neurosci | https://www.nature.com/articles/s41593-023-01382-9 |
| Mehta Y, Tyulmankov D, Rajagopalan AE, Turner GC, Fitzgerald JE#, Funke J# | 2023 | Model-based inference of synaptic plasticity rules. | bioRxiv | https://doi.org/10.1101/2023.12.11.571103 |
| Yang E, Zwart MF, James B, Rubinov M, Wei Z, Narayan S, Vladimirov N, Mensh BD, Fitzgerald JE, Ahrens | 2022 | A brainstem integrator for self-location memory and positional homeostasis in zebrafish. | Cell | https://doi.org/10.1016/j.cell.2022.11.022 |
| Biswas T, Fitzgerald JE | 2022 | Geometric framework to predict structure from function in neural networks. | Phys Rev Res | https://doi.org/10.1103/PhysRevResearch.4.023255 |
| Biswas T, Bishop WE, Fitzgerald JE | 2020 | Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings. | Curr Opin Neurobiol | https://doi.org/10.1016/j.conb.2020.10.021 |
| Yildizoglu T, Riegler C, Fitzgerald JE#, Portugues R# | 2020 | A neural representation of naturalistic motion-guided behavior in the zebrafish brain. | Curr Biol | https://doi.org/10.1016/j.cub.2020.04.043 |
| Dunn TW, Fitzgerald JE | 2020 | Correcting for physical distortions in visual stimuli improves reproducibility in zebrafish neuroscience. | eLife | https://doi.org/10.7554/eLife.53684 |
| Chen J, Mandel HB, Fitzgerald JE#, Clark DA# | 2019 | Asymmetric ON-OFF processing of visual motion cancels variability induced by the structure of natural scenes. | eLife | https://doi.org/10.7554/eLife.47579 |
| McKellar CE, Lillvis JL, Bath DE, Fitzgerald JE, Cannon JG, Simpson JH, Dickson BJ | 2019 | Threshold-based ordering of sequential actions during Drosophila courtship. | Curr Biol | https://doi.org/10.1016/j.cub.2018.12.019 |
| Salazar-Gatzimas E, Agrochao M, Fitzgerald JE, Clark DA | 2018 | The neuronal basis of an illusory motion percept is explained by decorrelation of parallel motion pathways. | Curr Biol | https://doi.org/10.1016/j.cub.2018.10.007 |
| Attardo A, Lu J, Kawashima T, Okuno H, Fitzgerald JE, Bito H, Schnitzer MJ | 2018 | Long-term consolidation of ensemble neural plasticity patterns in hippocampal area CA1. | Cell Rep | https://doi.org/10.1016/j.celrep.2018.09.064 |
| Naumann EA, Fitzgerald JE, Dunn TW, Rihel J, Sompolinsky H, Engert F | 2016 | From whole-brain data to functional circuit models: the zebrafish optomotor response. | Cell | https://doi.org/10.1016/j.cell.2016.10.019 |
| Fitzgerald JE, Clark DA | 2015 | Nonlinear circuits for naturalistic visual motion estimation. | eLife | https://doi.org/10.7554/eLife.09123 |
| Randlett O, Wee CL, Naumann EA, Nnaemeka O, Schoppik D, Fitzgerald JE, Portugues R, Lacoste AMB, Riegler C, Engert F#, Schier AF# | 2015 | Whole-brain activity mapping onto a zebrafish brain atlas. | Nat Methods | https://www.nature.com/articles/nmeth.3581 |
| Attardo A*, Fitzgerald JE*, Schnitzer MJ | 2015 | Impermanence of dendritic spines in live adult CA1 hippocampus. | Nature | https://www.nature.com/articles/nature14467 |
| Clark DA*, Fitzgerald JE*, Ales JM*, Gohl DM, Silies MA, Norcia AM, Clandinin TR | 2014 | Flies and humans share a motion estimation strategy that exploits natural scene statistics. | Nat Neurosci | https://www.nature.com/articles/nn.3600 |
| Fitzgerald JE | 2013 | Structure, Dynamics and Computation: Diverse Applications of Theory in Neuroscience | Stanford University | https://purl.stanford.edu/ty293dg5947 |
| Wilt BA, Fitzgerald JE, Schnitzer MJ | 2013 | Photon shot noise limits on optical detection of neuronal spikes and estimation of spike timing. | Biophys J | https://doi.org/10.1016/j.bpj.2012.07.058 |
| Fitzgerald JE*, Lu J*, Schnitzer MJ | 2012 | Estimation theoretic measure of resolution for stochastic localization microscopy. | Phys Rev Lett | https://doi.org/10.1103/PhysRevLett.109.048102 |
| Fitzgerald JE, Katsov AY, Clandinin TR, Schnitzer MJ | 2011 | Symmetries in stimulus statistics shape the form of visual motion estimators. | Proc Natl Acad Sci USA | https://doi.org/10.1073/pnas.1015680108 |
| DeBartolo J, Colubri A, Jha AK, Fitzgerald JE, Freed KF, Sosnick TR | 2009 | Mimicking the folding pathway to improve homology-free protein structure prediction. | Proc Natl Acad Sci USA | https://doi.org/10.1073/pnas.0811363106 |
| Kent AT, Jha AK, Fitzgerald JE, Freed KF | 2008 | Benchmarking implicit solvent folding simulations of the amyloid beta(10-35) fragment. | J Phys Chem B | https://doi.org/10.1021/jp077099h |
| Fitzgerald JE, Jha AK, Colubri A, Sosnick TR, Freed KF | 2007 | Reduced Cbeta statistical potentials can outperform all-atom potentials in decoy identification. | Protein Sci | https://doi.org/10.1110/ps.072939707 |
| Fitzgerald JE, Jha AK, Sosnick TR, Freed KF | 2007 | Polypeptide motions are dominated by peptide group oscillations resulting from dihedral angle correlations between nearest neighbors. | Biochemistry | https://doi.org/10.1021/bi061575x |